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Triton Cluster
Triton Environment
Triton Software Suites
Triton LSF Job Scheduling
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IDSC ACS Policies
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Triton user guides
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Triton Environment
Triton Introduction
Connecting to Triton
Software Environment Modules
Module Commands
Triton Standard Environment
Triton available modules
Triton module hierarchies
More hierarchies and dependencies
Triton Quickstart Guide
Before you get started:
Basic Concepts
home directory vs. scratch directory (scratch space)
login node vs. compute node
Basic Steps
1. Preparing the code you would like to run
2. Preparing the input data
3. Installing dependent libraries on Triton
4. Preparing the job script
5. Submitting and monitoring the job
6. Checking the job output
7. Chao
Triton Software Suites
Anaconda
Introduction
Conda General Commands
Conda Environment
Using Conda environment on the command line
Using Conda environment in the LSF job script
Creating an Conda environment
For Python
For R
Installing Conda packages
Different Anaconda Installed on Triton
Anaconda3
Anaconda2
Anaconda3 for Deep Learning
Installing Your Own Anaconda
IBM WML CE (Deep Learning)
Introduction
Using Anaconda
Installing WML CE packages
Using WML CE packages
Small testing using the command line interface
Submitting jobs using LSF on Triton
Installing other packages not included in WML CE
Using DDL (Testing)
Using LMS (Testing)
System Pre-installed WML CE packages
Conda General Commands
References and Additional Resources
JupyterHub
Introduction
Using JupyterHub on Triton
Login
Starting your Jupyter Notebook server
Logout
Using Jupyter Notebook
Creating Your Python Kernel
Creating Your R kernel
Removing Personal Kernels
Using Pre-installed Kernels
Switching to JupyterLab
Installing R via Anaconda
Anaconda Installation
Configuring Anaconda environment
Common R package dependencies
Activating conda environment upon login
Running jobs
Triton LSF Job Scheduling
Job Scheduler – LSF
LSF Batch Jobs
Job Queues
LSF Commands
Scheduling Jobs
Monitoring Jobs
bjobs
bhist
bkill
bqueues
bhosts
bpeek
Examining Job Output
LSF Job Scripts
Example script for a serial Job
Example scripts for parallel jobs
Interactive Jobs
Interactive Job Utilizing X11 client
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