Pegasus Software

• Software Modules
• Application Development
  • Compiling Serial Code
  • Configuring MPI on Pegasus
  • Compiling Parallel Programs with MPI
• Parallel Computing
  • C++ program and compilation:
• Installing Software on a Cluster
  • Downloading and extracting files
  • Configuring installation and compiling software
  • Updating PATH
  • Persistent PATH
• Allinea
• Amazon Web Services CLI
  • Getting Started
  • Using AWS s3 buckets from the cli
  • AWS s3 Include and Exclude filters
• MATLAB
  • Interactive Mode
  • Batch Processing
  • Parallel Computations
  • Note on Matlab cluster configurations
• Perl
  • Configuring a Local Library
• Python
  • Loading and Switching Python Modules
  • Installing Python Modules with Package Managers
  • Installing Downloaded Python Modules
• Python Virtual Environments
  • Creating Virtual Environments
  • Activating Virtual Environments
  • Comparing two Python Virtual Environments
  • Python virtual environment wrapper
• R
  • Batch R
  • Interactive R
  • R packages
• RStudio
  • Forwarding X11
  • Loading the Module
  • First Time configurations
  • Launching RStudio jobs through LSF
• SAS
  • Non-Interactive Batch Mode
• Using R through Anaconda
  • Anaconda Installation
  • Configuring Anaconda environment
  • Common R package dependencies
  • Activating conda environment upon login
  • Running jobs