acs_docs
Triton Cluster
Pegasus Cluster
Pegasus Environment
Pegasus Job Scheduling
Pegasus Software
Software Modules
Application Development
Parallel Computing
Installing Software on a Cluster
Allinea
Amazon Web Services CLI
MATLAB
Nextflow
Perl
Python
Python Virtual Environments
R
RStudio
SAS
Using R through Anaconda
Jupyterhub
SimVascular
Pegasus FAQ
Linux on Clusters
ACS Services
IDSC ACS Policies
acs_docs
Pegasus user guides
Pegasus Software
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Pegasus Software
Software Modules
Application Development
Compiling Serial Code
Compiling Parallel Programs with MPI
Parallel Computing
Sample parallel programs:
The LSF script to run parallel jobs
Installing Software on a Cluster
Downloading and extracting files
Configuring installation and compilation
Updating PATH
Persistent
PATH
Allinea
Amazon Web Services CLI
Getting Started
Using AWS s3 buckets from the cli
AWS s3 Include and Exclude filters
MATLAB
Interactive Mode
Batch Processing
Parallel Computations
Note on Matlab cluster configurations
Troubleshooting
Nextflow
Sample User Nextflow LSF Configuration
Nextflow Submission Script
Submit Job to LSF Cluster
Check status of running Job
View your Results
Perl
Configuring a Local Library
Python
Loading and Switching Python Modules
Installing Python Modules with Package Managers
Installing Downloaded Python Modules
Python Virtual Environments
Creating Virtual Environments
Activating Virtual Environments
Comparing two Python Virtual Environments
Python virtual environment wrapper
R
Batch R
Interactive R
Installing additional R packages
RStudio
Setup your $RSTUDIO_WORK_DIR
Edit your rstudio_lsf.job Script
Run RSTUDIO on Pegasus Nodes
SAS
Non-Interactive Batch Mode
Using R through Anaconda
Anaconda Installation
Configuring Anaconda environment
Common R package dependencies
Activating conda environment upon login
Running jobs
Jupyterhub
Introduction
Using JupyterHub on Pegasus
Switching between JupyterLab & JupyterHub
Using Jupyter Notebook
SimVascular
Forwarding X11
Loading the Module
Launching Graphical Interactive Jobs