.. _p-softs:

Pegasus Software Suites
=======================

.. toctree::
   :maxdepth: 2
   :caption: Modules and Languages

   Modules <1-environments/modules>
   Perl <1-environments/perl>
   Python <1-environments/python>
   Python Virtual environments <1-environments/python-ve>
   R <1-environments/r>
   Using R through Anaconda <1-environments/RInstallation_via_conda>

.. toctree::
   :maxdepth: 2
   :caption: Data Science Tools

   Jupyterhub <2-data_science/Jupyterhub>
   RStudio <2-data_science/RStudio>
   SAS <2-data_science/sas>
   Pytorch-Cuda <2-data_science/Pytorch-Cuda>


.. toctree::
   :maxdepth: 2
   :caption: Application Development

   Application Development Overview <3-app_dev/appdev>
   Amazon Web Services CLI <3-app_dev/amazon_cli>

.. toctree::
   :maxdepth: 2
   :caption: Scientific Computing

   MATLAB <4-scientific_computing/matlab>
   SimVascular <4-scientific_computing/SimVascular>

.. toctree::
   :maxdepth: 2
   :caption: Workflow Engines

   Nextflow <5-workflows/nextflow>

.. toctree::
   :maxdepth: 2
   :caption: Utilities
   Allinea <6-utility/allinea>